Upload dictionaries and data into the DataSHIELD backend.

du.upload(
  dict_version,
  data_version = "1_0",
  dict_kind,
  cohort_id,
  database_name = "opal_data",
  data_input_format = du.enum.input.format()$CSV,
  data_input_path,
  action = du.enum.action()$ALL,
  upload = TRUE,
  run_mode = du.enum.run.mode()$NORMAL,
  override_project = NULL
)

Arguments

dict_version: version of the data dictionary to be used
data_version: version of the dataset to be uploaded
dict_kind: can be 'core' or 'outcome'
cohort_id: cohort name
database_name: is the name of the data backend of DataSHIELD, default = opal_data
data_input_format: format of the database to be reshaped. Can be 'CSV', 'STATA', 'SAS' or RDS (R)
data_input_path: path to the to-be-uploaded data
action: action to be performed, can be 'reshape', 'populate' or 'all'
upload: do you want to upload the data (true or false)
run_mode: default = NORMAL, can be TEST and NON_INTERACTIIVE
override_project: overrides the generated project name

Examples

if (FALSE) {
du.upload(
  data_input_format = "CSV",
  data_input_path = "~/path-to-file/all_measurements_v1_2.csv",
  data_version = "1_0",
  dict_version = "2_1",
  cohort_id = "gecko"
)
}